Community-led, integrated, reproducible multi-omics with anvi'o
A. Murat Eren
(1, 2)
,
Evan Kiefl
(1)
,
Alon Shaiber
(1)
,
Iva Veseli
(1)
,
Samuel E. Miller
(1)
,
Matthew S. Schechter
(1)
,
Isaac Fink
(1)
,
Jessica N. Pan
(1)
,
Mahmoud Yousef
(1)
,
Emily C. Fogarty
(1)
,
Florian Trigodet
(1)
,
Andrea R. Watson
(1)
,
Özcan C. Esen
(1)
,
Ryan M. Moore
(3)
,
Quentin Clayssen
(4)
,
Michael D. Lee
(5, 6)
,
Veronika Kivenson
(7)
,
Elaina D. Graham
(8)
,
Bryan D. Merrill
(9)
,
Antti Karkman
(10)
,
Daniel Blankenberg
(11)
,
John M. Eppley
(12)
,
Andreas Sjodin
(13, 14)
,
Jarrod J. Scott
(15)
,
Xabier Vazquez-Campos
(16)
,
Luke J. Mckay
(17)
,
Elizabeth A. Mcdaniel
(18)
,
Sarah L. R. Stevens
(19, 18)
,
Rika E. Anderson
(20)
,
Jessika Fuessel
(1)
,
Antonio Fernandez-Guerra
(21, 22)
,
Lois Maignien
(2, 23)
,
Tom O. Delmont
(24, 25)
,
Amy D. Willis
(26)
1
The University of Chicago Medicine [Chicago]
2 MBL - Marine Biological Laboratory
3 University of Delaware [Newark]
4 Ecole Polytechnique Fédérale de Zurich
5 ARC - NASA Ames Research Center
6 BMSIS - Blue Marble Space Institute of Science
7 OSU - Oregon State University
8 USC - University of Southern California
9 Department of Microbiology and Immunology [Stanford]
10 Helsingin yliopisto = Helsingfors universitet = University of Helsinki
11 Department of Genomic Medicine [Lerner Research Institute, Cleveland Clinic]
12 UHM - University of Hawai‘i [Mānoa]
13 FOI - Swedish Defence Research Agency [Stockholm]
14 Umeå University = Umeå Universitet
15 Smithsonian Tropical Research Institute
16 School of Biotechnology and Biomolecular Sciences
17 MSU - Montana State University
18 University of Wisconsin-Madison
19 Wisconsin Institute for Discovery [Madison]
20 Carleton College
21 Microbial genomics and bioinformatics research group
22 ITU - IT University of Copenhagen
23 LM2E - Laboratoire de Microbiologie des Environnements Extrêmophiles
24 UMR 8030 - Génomique métabolique
25 GOSEE - Global Oceans Systems Ecology & Evolution - Tara Oceans
26 University of Washington [Seattle]
2 MBL - Marine Biological Laboratory
3 University of Delaware [Newark]
4 Ecole Polytechnique Fédérale de Zurich
5 ARC - NASA Ames Research Center
6 BMSIS - Blue Marble Space Institute of Science
7 OSU - Oregon State University
8 USC - University of Southern California
9 Department of Microbiology and Immunology [Stanford]
10 Helsingin yliopisto = Helsingfors universitet = University of Helsinki
11 Department of Genomic Medicine [Lerner Research Institute, Cleveland Clinic]
12 UHM - University of Hawai‘i [Mānoa]
13 FOI - Swedish Defence Research Agency [Stockholm]
14 Umeå University = Umeå Universitet
15 Smithsonian Tropical Research Institute
16 School of Biotechnology and Biomolecular Sciences
17 MSU - Montana State University
18 University of Wisconsin-Madison
19 Wisconsin Institute for Discovery [Madison]
20 Carleton College
21 Microbial genomics and bioinformatics research group
22 ITU - IT University of Copenhagen
23 LM2E - Laboratoire de Microbiologie des Environnements Extrêmophiles
24 UMR 8030 - Génomique métabolique
25 GOSEE - Global Oceans Systems Ecology & Evolution - Tara Oceans
26 University of Washington [Seattle]
Tom O. Delmont
- Function : Author
- PersonId : 1120430
- IdHAL : tom-delmont
- ORCID : 0000-0001-7053-7848
- IdRef : 165190132
Abstract
Big data abound in microbiology, but the workflows designed to enable researchers to interpret data can constrain the biological questions that can be asked. Five years after anvi’o was first published, this community-led multi-omics platform is maturing into an open software ecosystem that reduces constraints in ‘omics data analyses.