Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics
Alexey Vorobev
,
Marion Dupouy
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Quentin Carradec
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Tom O. Delmont
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Anita Annamalé
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et al.
Journal articles
hal-02573621v1
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Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara
Zoé Mériguet
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Anna Oddone
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David Le Guen
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Thibaut Pollina
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Romain Bazile
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et al.
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hal-03877194v1
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Tracing the invertebrate herpesviruses in the global sequence datasets
Umberto Rosani
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Morgan Gaia
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Tom O Delmont
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Mart Krupovic
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pasteur-04162270v1
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Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation
Christian Voolstra
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Benjamin Hume
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Eric Armstrong
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Guinther Mitushasi
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Barbara Porro
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et al.
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hal-04176277v1
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Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean
Eric J Armstrong
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Julie Lê-Hoang
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Quentin Carradec
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Jean-Marc Aury
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Benjamin Noel
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et al.
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cea-04171796v1
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MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
Benjamin Churcheward
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Maxime Millet
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Audrey Bihouée
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Guillaume Fertin
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Samuel Chaffron
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hal-03781944v1
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Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean
Maggie M Reddy
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Corentine Goossens
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Yuxiang Zhou
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Slimane Chaib
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Delphine Raviglione
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et al.
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hal-04184949v1
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Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean
Greta Busseni
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Luigi Caputi
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Roberta Piredda
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Paul Fremont
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Bruno Hay Mele
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et al.
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hal-02992584v1
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Mirusviruses link herpesviruses to giant viruses
Morgan Gaïa
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Lingjie Meng
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Eric Pelletier
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Patrick Forterre
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Chiara Vanni
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et al.
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pasteur-04085734v1
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Marine snow originating from appendicularian houses: Age-dependent settling characteristics
Fabien Lombard
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Thomas Kiorboe
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istex
hal-04020174v1
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods
Juan José Pierella Karlusich
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Eric Pelletier
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Fabien Lombard
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Madeline Carsique
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Etienne Dvorak
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et al.
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hal-03334117v2
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Tom Delmont
,
Morgan Gaia
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Damien Hinsinger
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Paul Frémont
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Chiara Vanni
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et al.
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hal-03872935v2
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Microbial community functioning during plant litter decomposition
Simon Schroeter
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Damien Eveillard
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Samuel Chaffron
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Johanna Zoppi
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Bernd Kampe
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et al.
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hal-03781927v1
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MiBiOmics: an interactive web application for multi-omics data exploration and integration
Johanna Zoppi
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Jean-François Guillaume
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Michel Neunlist
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Samuel Chaffron
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hal-03101013v1
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Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals
Alice Rouan
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Melanie Pousse
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Nadir Djerbi
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Barbara Porro
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Guillaume Bourdin
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et al.
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cea-04171809v1
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Magali Lescot
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Pascal Hingamp
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Kenji Kojima
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Emilie Villar
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Sarah Romac
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et al.
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hal-02964380v1
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Linking extreme seasonality and gene expression in arctic marine protists
Magdalena Wutkowska
,
Anna Vader
,
Ramiro Logares
,
Eric Pelletier
,
Tove Gabrielsen
2021
Preprints, Working Papers, ...
cea-03480606v1
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Investigating population‐scale allelic differential expression in wild populations of Oithona similis (Cyclopoida, Claus, 1866)
Romuald Laso‐jadart
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Kevin Sugier
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Emmanuelle Petit
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Karine Labadie
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Pierre Peterlongo
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et al.
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hal-02999798v1
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Editorial: Technological advances for measuring planktonic components of the pelagic ecosystem: An integrated approach to data collection and analysis
Sophie G. Pitois
,
Elaine S. Fileman
,
Mark C. Benfield
,
Peter H. Wiebe
,
Fabien Lombard
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hal-04020892v1
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Plankton biogeography in the 21st century and impacts of climate change: advances through genomics
Paul Frémont
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Marion Gehlen
,
Olivier Jaillon
Journal articles
hal-04026636v1
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Planktoscope protocol for plankton imaging
Fabien Lombard
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hal-04020900v1
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Contribution of genome scale metabolic modeling to niche theory
Antoine Régimbeau
,
Marko Budinich
,
Abdelhalim Larhlimi
,
Juan Jose Pierella Karlusich
,
Olivier Aumont
,
et al.
2021
Preprints, Working Papers, ...
hal-03352833v1
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Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
Hisashi Endo
,
Romain Blanc Mathieu
,
Yanze Li
,
Guillem Salazar
,
Nicolas Henry
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et al.
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hal-02974168v1
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Global observation of plankton communities from space
Hiroto Kaneko
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Hisashi Endo
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Nicolas Henry
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Cédric Berney
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Frédéric Mahé
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et al.
2022
Preprints, Working Papers, ...
hal-03855690v1
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Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective
Youri Timsit
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Magali Lescot
,
Martha Valiadi
,
Fabrice Not
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hal-03402318v1
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Disentangling temporal associations in marine microbial networks
Ina Maria Deutschmann
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Anders Krabberød
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Francisco Latorre
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Erwan Delage
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Cèlia Marrasé
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et al.
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hal-03781901v2
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Diversity of the Pacific Ocean coral reef microbiome
Pierre Galand
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Hans-Joachim Ruscheweyh
,
Guillem Salazar
,
Corentin Hochart
,
Nicolas Henry
,
et al.
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hal-04176291v1
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Functional trait-based approaches as a common framework for aquatic ecologists: Synthesis and recent results
Séverine Martini
,
Floriane Larras
,
Aurélien Boyé
,
Emile Faure
,
Nicole Aberle
,
et al.
ALSO Aquatic Sciences Meeting , Association for the Sciences of Limnology and Oceanography (ASLO), Jun 2023, Palma de Mallorca, Balearic Islands, Spain. pp.965-994,
⟨10.1002/lno.11655⟩
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hal-04117032v1
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Meta-omics reveals genetic flexibility of diatom nitrogen transporters in response to environmental changes
Greta Busseni
,
Fabio Rocha Jimenez Vieira
,
Alberto Amato
,
Eric Pelletier
,
Juan Pierella Karlusich
,
et al.
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hal-02184019v1
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Metagenomic Mining for Amine Dehydrogenase Discovery
Adam Caparco
,
Eric Pelletier
,
Jean Louis Petit
,
Aurélie Jouenne
,
Bettina Bommarius
,
et al.
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hal-04150129v1
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