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Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3

Christine C. Delorme , Eric Guédon , Nicolas N. Pons , Corinne Cruaud , Arnaud A. Couloux , et al.
Journal of Bacteriology, 2011, 193 (18), pp.5041-5042. ⟨10.1128/JB.05416-11⟩
Journal articles hal-01000176v1
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Genome Resolved Biogeography of Mamiellales

Jade Leconte , L. Felipe Felipe Benites , Thomas Vannier , Patrick Wincker , Gwenael Piganeau , et al.
Genes, 2020, 11 (1), pp.66. ⟨10.3390/genes11010066⟩
Journal articles hal-02505108v1

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Michon-Coudouel , et al.
Heredity, 2013, 110 (2), pp.181-193. ⟨10.1038/hdy.2012.76⟩
Journal articles hal-00797941v1

Comparative genomics of the Nakaseomyces clade: Candida glabrata and enew merging pathogens

Cécile Fairhead , Toni Gabaldón , Tiphaine Martin , Pascal Durrens , Olivier Lespinet , et al.
Comparative Genomics of Eukaryotic Microorganisms,, Oct 2011, Sant Feliu de Guixols, Spain
Conference papers hal-00674241v1
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Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.

France Denoeud , Michaël Roussel , Benjamin Noel , Ivan Wawrzyniak , Corinne da Silva , et al.
Genome Biology, 2011, 12 (3), pp.R29. ⟨10.1186/gb-2011-12-3-r29⟩
Journal articles inserm-00617212v1

Chromosome-scale assemblies of Brassica oleracea and Brassica rapa using nanopore long reads and optical maps

Caroline Belser , Bejamin Istace , Denis Engemann , M Dubarry , Cyril Falentin , et al.
21st Crucifer Genetics Conference on Brassica - Bassica 2018, Jul 2018, Saint-Malo, France
Conference poster hal-03318378v1

Genes under positive selection in a model plant pathogenic fungus, Botrytis

Gabriela G. Aguileta , Juliette J. Lengellé , Helene H. Chiapello , Tatiana T. Giraud , Muriel M. Viaud , et al.
Infection, Genetics and Evolution, 2012, 12 (05), pp.987-996. ⟨10.1016/j.meegid.2012.02.012⟩
Journal articles istex hal-01000313v1

Co-evolution of chloroplast and nuclear genomes in flowering plants and impact of allopolyploidy on fine tune cytonuclear interactions.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , et al.
International Conference on Polyploidy, Jun 2019, Ghent, Belgium
Conference papers hal-03318182v1
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Insights into metazoan evolution from Alvinella pompejana cDNAs.

Nicolas Gagnière , Didier Jollivet , Isabelle Boutet , Yann Brélivet , Didier Busso , et al.
BMC Genomics, 2010, 11 (1), pp.634. ⟨10.1186/1471-2164-11-634⟩
Journal articles inserm-00617220v1
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Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase

Elodie Fleury , Arnaud Huvet , Christophe Lelong , Julien de Lorgeril , Viviane Boulo , et al.
BMC Genomics, 2009, 10 (341), pp.341. ⟨10.1186/1471-2164-10-341⟩
Journal articles inria-00435769v1

Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia

Jean-Marc Aury , Olivier Jaillon , * Laurent Duret , Benjamin Noel , Claire Jubin , et al.
Nature, 2006, 444 (7116), pp.171-178. ⟨10.1038/nature05230⟩
Journal articles hal-00090904v1

European mink (Mustela lutreola) reference genome and population genomics

Alice Mouton , Christine Fournier-Chambrillon , Pascal Fournier , Jakub Skorupski , Przemysław Śmietana , et al.
34th European Mustelid Colloquium, Sep 2022, Online conference, France
Conference papers hal-03787589v1

Bioinformatic analysis of Sanger and 454 ESTs in oak

Saneyoshi S. Ueno , Grégoire G. Le Provost , Valérie V. Léger , Christophe C. Klopp , Celine C. Noirot , et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73
Conference papers hal-00964385v1
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The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Gotthard Kunze , Claude Gaillardin , Małgorzata Czernicka , Pascal Durrens , Tiphaine Martin , et al.
Biotechnology for Biofuels, 2014, 7 (1), pp.66. ⟨10.1186/1754-6834-7-66⟩
Journal articles pasteur-00988609v1

A Role for RNAi in the Selective Correction of DNA Methylation Defects

Karam Teixeira Felipe , Heredia Fabiana , Sarazin Alexis , François Roudier , Boccara Martine , et al.
Science, 2009, 323 (5921), pp.1600. ⟨10.1126/science.1165313⟩
Journal articles cea-00817409v1

Complete Genome Sequence of the Highly Hemolytic Strain Bacillus cereus F837/76

Sandrine S. Auger , Nathalie N. Galleron , Béatrice Segurens , Carole C. Dossat , Alexandre A. Bolotine , et al.
Journal of Bacteriology, 2012, 194 (6), pp.1630 - 1630. ⟨10.1128/JB.06719-11⟩
Journal articles hal-01004271v1
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The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle

Lucas R Leclère , Coralie Horin , Sandra Chevalier , Pascal Lapébie , Philippe Dru , et al.
Nature Ecology & Evolution, 2019, 3 (5), pp.801-810. ⟨10.1038/s41559-019-0833-2⟩
Journal articles hal-02115215v1
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Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

Carine Genet , Patrice Dehais , Yniv Y. Palti , Guangtu G. Gao , Frédérick F. Gavory , et al.
BMC Genomics, 2011, 12, online (june), Non paginé. ⟨10.1186/1471-2164-12-314⟩
Journal articles hal-01000483v1
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LONG DNA TECHNOLOGIES EVALUATION FOR PLANT STRUCTURAL VARIATIONS DETECTION : NANOPORE ONT SEQUENCING vs BIONANO GENOMICS OPTICAL MAPPING

Aurélie Canaguier , Erwan Denis , Romane Guilbaud , Ghislaine Magdelenat , Caroline Belser , et al.
Plant and Animal Genome XXVIII Conference, Jan 2020, San Diego, United States.
Conference poster hal-02925940v1

Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus

Mathieu Rousseau-Gueutin , Jérémy Lucas , France Denoeud , Julie Ferreira de Carvalho , Zhesi He , et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France
Conference papers hal-03318226v1
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Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells

Jean-François Mangot , Ramiro Logares , Pablo Sánchez , Fran Latorre , Yoann 6 Seeleuthner , et al.
Scientific Reports, 2017, 7, pp.41498. ⟨10.1038/srep41498⟩
Journal articles hal-01466618v1

Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis

Julie Ferreira de Carvalho , Houda Chelaifa , Julien Boutte , Julie Poulain , Arnaud Couloux , et al.
Plant Molecular Biology, 2013, 83 (6), pp.606. ⟨10.1007/s11103-013-0111-7⟩
Journal articles istex hal-00943497v1
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Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Yucheng Wang , Mikkel Winther Pedersen , Inger Greve Alsos , Bianca de Sanctis , Fernando Racimo , et al.
Nature, 2021, 598 (7882), pp.634-640. ⟨10.1038/s41586-021-04016-x⟩
Journal articles hal-03431961v1
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Comparative genomics of emerging pathogens in the Candida glabrata clade.

Toni Gabaldón , Tiphaine Martin , Marina Marcet-Houben , Pascal Durrens , Monique Bolotin-Fukuhara , et al.
BMC Genomics, 2013, 14 (1), pp.623. ⟨10.1186/1471-2164-14-623⟩
Journal articles inserm-00871184v1

Apport des nouvelles générations de séquençage pour accéder à la diversité des communautés microbiennes du sol : nécessité d’un ‘pipeline’ bio-informatique pour les biologistes

Sébastien Terrat , Samuel Dequiedt , Richard Christen , Mélanie M. Lelievre , Tiffanie Regnier , et al.
Journées d'animation "MEM Days" organisées par l'INRA, Jan 2012, Ecully, France
Conference papers hal-02809171v1
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Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

Benjamin Istace , Caroline Belser , Cyril Falentin , Karine Labadie , Franz Boideau , et al.
Biology, 2021, 10 (8), ⟨10.3390/biology10080732⟩
Journal articles hal-03318024v1