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Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation

Julien Guyonnet , Martin Guillemet , Audrey Dubost , Laurent Simon , Philippe Ortet , et al.
Frontiers in Plant Science, 2018, 9, pp.1-13. ⟨10.3389/fpls.2018.01662⟩
Journal articles cea-01968948v1
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Amplifying and Fine-Tuning Rsm sRNAs Expression and Stability to Optimize the Survival of Pseudomonas brassicacerum in Nutrient-Poor Environments

David Lalaouna , Sylvain Fochesato , Mourad Harir , Philippe Ortet , Philippe Schmitt-Kopplin , et al.
Microorganisms, 2021, 9 (2), pp.250. ⟨10.3390/microorganisms9020250⟩
Journal articles hal-03142300v1

Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil

Philippe Ortet , Nicolas Gallois , Laurie Piette , Justine Long , C. Berthomieu , et al.
Genome Announcements, 2017, 5 (14), pp.e00092-17. ⟨10.1128/genomeA.00092-17⟩
Journal articles hal-03906419v1
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Where does the alignment score distribution shape come from?

Philippe Ortet , Olivier Bastien
Evolutionary Bioinformatics, 2010, 6, pp.159-87. ⟨10.4137/EBO.S5875⟩
Journal articles hal-00592151v1

The configuration space of homologous proteins: A theoretical and practical framework to reduce the diversity of the protein sequence space after massive all-by-all sequence comparisons

Olivier Bastien , Philippe Ortet , Sylvaine Roy , Eric Maréchal
Future Generation Computer Systems, 2007, 23, pp.410-427. ⟨10.1016/j.future.2006.07.016⟩
Journal articles istex hal-00121028v1
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Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites

Fabien Sindikubwabo , Shuai Ding , Tahir Hussain , Philippe Ortet , ​mohamed Barakat , et al.
eLife, 2017, 6, pii: e29391. ⟨10.7554/eLife.29391⟩
Journal articles hal-02022719v1

Bacterial adaptation to hot and dry deserts

Thierry Heulin , Gilles de Luca , ​mohamed Barakat , Arjan de Groot , Laurence Blanchard , et al.
Adaption of Microbial Life to Environmental Extremes, Springer Vienna, pp.69-85, 2012, ⟨10.1007/978-3-211-99691-1_4⟩
Book sections hal-02011043v1
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Structure, function, and evolution of the Thiomonas spp. genome.

Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler , et al.
PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩
Journal articles hal-00463879v1
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Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons

Mathieu Baudet , Philippe Ortet , Jean-Charles Gaillard , Bernard Fernandez , Philippe Guérin , et al.
Molecular and Cellular Proteomics, 2010, 9, pp.415-426. ⟨10.1074/mcp.M900359-MCP200⟩
Journal articles hal-00581589v1
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Plant hosts control microbial denitrification activity

Wafa Achouak , Danis Abrouk , Julien Guyonnet , ​mohamed Barakat , Philippe Ortet , et al.
FEMS Microbiology Ecology, 2019, 95 (3), pp.fiz021. ⟨10.1093/femsec/fiz021⟩
Journal articles cea-02096084v1
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An insight into the genome of extensively drug-resistant and uropathogenic Citrobacter werkmanii

Shadab Parvez , Asad U Khan , Gurwinder Kaur , ​mohamed Barakat , Philippe Ortet , et al.
Journal of Global Antimicrobial Resistance, 2020, 22, pp.785 - 791. ⟨10.1016/j.jgar.2020.06.014⟩
Journal articles hal-03071675v1
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Soil prokaryotic communities in Chernobyl waste disposal trench T22 are modulated by organic matter and radionuclide contamination

Nicolas Theodorakopoulos , Laureline Fevrier , ​mohamed Barakat , Philippe Ortet , Richard Christen , et al.
FEMS Microbiology Ecology, 2017, 93 (8), ⟨10.1093/femsec/fix079⟩
Journal articles hal-01680959v1

Microbiote shift in the Medicago sativa rhizosphere in response to cyanotoxins extract exposure

Fatima El Khalloufi , Khalid Oufdou , Marie Bertrand-Huleux , Majida Lahrouni , Brahim Oudra , et al.
Science of the Total Environment, 2016, 539, pp.135-142. ⟨10.1016/j.scitotenv.2015.08.127⟩
Journal articles cea-02194508v1

Bacterial Adaptation to Hot and Dry Deserts

Thierry Heulin , Gilles de Luca , ​mohamed Barakat , Maxime Gommeaux , Arjan de Groot , et al.
Adaption of Microbial Life to Environmental Extremes: Novel Research Results and Application, Second Edition, Springer International Publishing, pp.75-98, 2017, ⟨10.1007/978-3-319-48327-6_4⟩
Book sections hal-03040518v1
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Isolation and identification of Pseudomonas syringae facilitated by a PCR targeting the whole P. syringae group

Caroline Guilbaud , Cindy E. Morris , ​mohamed Barakat , Philippe Ortet , Odile Berge
FEMS Microbiology Ecology, 2016, 92 (1), pp.fiv146. ⟨10.1093/femsec/fiv146⟩
Journal articles hal-02632676v1
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Light on the cell cycle of the non-photosynthetic bacterium $Ramlibacter\ tataouinensis$

Gilles de Luca , Sylvain Fochesato , Jérôme Lavergne , Katrina Forest , ​mohamed Barakat , et al.
Scientific Reports, 2019, 9, pp.16505. ⟨10.1038/s41598-019-52927-7⟩
Journal articles cea-02370372v1
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Phytobeneficial Bacteria Improve Saline Stress Tolerance in Vicia faba and modulate microbial interaction network

Loubna Benidire , Fatima El Khalloufi , Khalid Oufdou , ​mohamed Barakat , Joris Tulumello , et al.
Science of the Total Environment, 2020
Journal articles hal-03065045v1
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Drug inhibition of HDAC3 and epigenetic control of differentiation in Apicomplexa parasites.

Alexandre Bougdour , Danièle Maubon , Patricia Baldacci , Philippe Ortet , Olivier Bastien , et al.
Journal of Experimental Medicine, 2009, 206 (4), pp.953-66. ⟨10.1084/jem.20082826⟩
Journal articles hal-00389147v1
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A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation

Julie Misson , Kashchandra G. Raghothama , Ajay Jain , Juliette Jouhet , Maryse A. Block , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2005, 102 (33), pp.11934-11939. ⟨10.1073/pnas.0505266102⟩
Journal articles hal-00086798v1

Correction: Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria

Nicolas Gallois , Béatrice Alpha-Bazin , Nicolas Bremond , Philippe Ortet , Mohamed Barakat , et al.
Journal articles irsn-03564149v1
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Proteogenomic insights into uranium tolerance of a Chernobyl's $Microbacterium$ bacterial isolate

Nicolas Gallois , Béatrice Alpha-Bazin , Philippe Ortet , ​mohamed Barakat , Laurie Piette , et al.
Journal of Proteomics, 2018, 177, pp.148-157. ⟨10.1016/j.jprot.2017.11.021⟩
Journal articles cea-01944196v1

Proteogenomic insights into uranium tolerance of a Chernobyl's $Microbacterium$ bacterial isolate

Nicolas Gallois , Béatrice Alpha-Bazin , Philippe Ortet , ​mohamed Barakat , Laurie Piette , et al.
Journal of Proteomics, 2018, 177, pp.148-157. ⟨10.1016/j.jprot.2017.11.021⟩
Journal articles cea-03906408v1
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A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Daniel Muller , Claudine Médigue , Sandrine Koechler , Valérie Barbe , ​mohamed Barakat , et al.
PLoS Genetics, 2007, 3 (4), pp.e53. ⟨10.1371/journal.pgen.0030053⟩
Journal articles hal-00340034v1

Host cell subversion by Toxoplasma GRA16, an exported dense granule protein that targets the host cell nucleus and alters gene expression.

Alexandre Bougdour , Eric Durandau , Marie-Pierre Brenier-Pinchart , Philippe Ortet , ​mohamed Barakat , et al.
Cell Host and Microbe, 2013, 13 (4), pp.489-500. ⟨10.1016/j.chom.2013.03.002⟩
Journal articles hal-00839564v1
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Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?

Lyn-Marie Birkholtz , Olivier Bastien , Gordon Wells , Delphine Grando , Fourie Joubert , et al.
Malaria Journal, 2006, 5 (1), pp.110. ⟨10.1186/1475-2875-5-110⟩
Journal articles hal-00121210v1
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P2CS: updates of the prokaryotic two-component systems database

Philippe Ortet , David E. Whitworth , Catherine Santaella , Wafa Achouak , ​mohamed Barakat
Nucleic Acids Research, 2015, 43, pp.D536-D541. ⟨10.1093/nar/gku968⟩
Journal articles hal-01229516v1

Proteomics data for characterizing $Microbacterium$ $oleivorans\ A9$, an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant

Nicolas Gallois , Laurie Piette , Philippe Ortet , ​mohamed Barakat , Justine Long , et al.
Data in Brief, 2018, 21, pp.1125-1129. ⟨10.1016/j.dib.2018.10.136⟩
Journal articles cea-03906428v1
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Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil

Philippe Ortet , Nicolas Gallois , Laurie Piette , Justine Long , C. Berthomieu , et al.
Genome Announcements, 2017, 5 (14), pp.e00092-17. ⟨10.1128/genomeA.00092-17⟩
Journal articles hal-01560969v1

A MORC-driven transcriptional switch controls Toxoplasma developmental trajectories and sexual commitment

Dayana Farhat , Christopher Swale , Céline Dard , Dominique Cannella , Philippe Ortet , et al.
Nature Microbiology, 2020, 5 (4), pp.570-583. ⟨10.1038/s41564-020-0674-4⟩
Journal articles hal-02551175v1

Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3

Khawla Seddiki , François Godart , Riccardo Aiese Cigliano , Walter Sanseverino , ​mohamed Barakat , et al.
Genome Announcements, 2018, 6 (11), pp.e01335-01317. ⟨10.1128/genomeA.01335-17⟩
Journal articles hal-01743654v1